Package: peptools 1.2.0

Marcus Beck

peptools: Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data

Analysis tools for importing, wrangling, and summarizing Suffolk County water quality data. Functions are used to create reporting materials.

Authors:Marcus Beck [aut, cre], Gerold Morrison [aut], Holly Greening [aut]

# Install 'peptools' in R:

install.packages('peptools', repos = c('https://tbep-tech.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

On CRAN:

Last updated from:873bd89fb4. Checks:8 ERROR, 1 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	ERROR	225
source / vignettes	ERROR	406
linux-release-x86_64	ERROR	237
macos-release-arm64	ERROR	166
macos-oldrel-arm64	ERROR	153
windows-devel	ERROR	232
windows-release	ERROR	270
windows-oldrel	ERROR	218
wasm-release	OK	187

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Help page	Topics
Get attainment categories	anlz_attainpep
Analyze daily DO values relative to threshold	anlz_dodlypep
Analyze monthly DO values relative to threshold	anlz_domopep
Count beach exceedances for enterococcus	anlz_entpep
Estimate annual medians	anlz_medpep
Bathing beaches	beaches
Dissolved oxygen data for USGS stations	dodat
Raw beach pathogen data from Suffolk County	entdat
Polygon shapefile of segment boundaries	pepseg
Bay stations by segment	pepstations
Bay segment targets	peptargets
Raw water quality data from Suffolk County	rawdat
Import dissolved oxygen data	read_pepdo
Import raw enterococcus data	read_pepent
Import raw water quality data	read_pepwq
Plot annual water quality value and thresholds for all segments	show_allthrpep
Plot monthly chlorophyll, secchi, or tn values values for a segment	show_boxpep
Create a colorized table for reporting dissolved oxygen data by site	show_domatrix
Create a colorized table for beach pathogen exceedances	show_entmatrix
Create a colorized table for indicator reporting	show_matrixpep
Plot chlorophyll and secchi data together with matrix outcomes	show_plotlypep
Create reactable table from matrix data	show_reactablepep
Create a colorized table for water quality outcomes and exceedances by segment	show_segmatrixpep
Map water quality data for a selected year	show_sitemappep
Plot annual water quality value and thresholds for a segment	show_thrpep
Create a colorized table for chlorophyll or secchi exceedances	show_wqmatrixpep